3D structure

PDB id
7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome as it decodes the Sec-UGA codon
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
UCGGUC*GGAGU*AA
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7ZJW_008 not in the Motif Atlas
Homologous match to J3_8P9A_055
Geometric discrepancy: 0.1501
The information below is about J3_8P9A_055
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_31965.2
Basepair signature
cWW-F-cWW-F-F-F-F-F-cWW-F
Number of instances in this motif group
6

Unit IDs

7ZJW|1|L5|U|2283
7ZJW|1|L5|C|2284
7ZJW|1|L5|G|2285
7ZJW|1|L5|G|2286
7ZJW|1|L5|U|2287
7ZJW|1|L5|C|2288
*
7ZJW|1|L5|G|2358
7ZJW|1|L5|G|2359
7ZJW|1|L5|A|2360
7ZJW|1|L5|G|2361
7ZJW|1|L5|U|2362
*
7ZJW|1|L5|A|2379
7ZJW|1|L5|A|2380

Current chains

Chain L5
28S rRNA

Nearby chains

Chain L8
5.8S ribosomal RNA; 5.8S rRNA
Chain La
60S ribosomal protein uL23
Chain Lj
60S ribosomal protein L34
Chain Ln
60S ribosomal protein eL38
Chain Lo
60S ribosomal protein eL39

Coloring options:


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