J3_7ZJW_008
3D structure
- PDB id
- 7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome as it decodes the Sec-UGA codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UCGGUC*GGAGU*AA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7ZJW_008 not in the Motif Atlas
- Homologous match to J3_8P9A_055
- Geometric discrepancy: 0.1501
- The information below is about J3_8P9A_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_94309.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
7ZJW|1|L5|U|2283
7ZJW|1|L5|C|2284
7ZJW|1|L5|G|2285
7ZJW|1|L5|G|2286
7ZJW|1|L5|U|2287
7ZJW|1|L5|C|2288
*
7ZJW|1|L5|G|2358
7ZJW|1|L5|G|2359
7ZJW|1|L5|A|2360
7ZJW|1|L5|G|2361
7ZJW|1|L5|U|2362
*
7ZJW|1|L5|A|2379
7ZJW|1|L5|A|2380
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain L8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain La
- 60S ribosomal protein uL23
- Chain Lj
- 60S ribosomal protein L34
- Chain Ln
- 60S ribosomal protein eL38
- Chain Lo
- 60S ribosomal protein eL39
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