J3_7ZP8_012
3D structure
- PDB id
- 7ZP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S E. coli ribosome with a stalled filamin domain 5 nascent chain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
- Length
- 28 nucleotides
- Bulged bases
- 7ZP8|1|b|A|504, 7ZP8|1|b|A|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7ZP8_012 not in the Motif Atlas
- Homologous match to J3_9DFE_002
- Geometric discrepancy: 0.1068
- The information below is about J3_9DFE_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
7ZP8|1|b|G|30
7ZP8|1|b|C|31
*
7ZP8|1|b|G|474
7ZP8|1|b|C|475
7ZP8|1|b|G|476
7ZP8|1|b|A|477
7ZP8|1|b|A|478
7ZP8|1|b|A|479
7ZP8|1|b|A|480
7ZP8|1|b|G|481
7ZP8|1|b|A|482
7ZP8|1|b|A|483
7ZP8|1|b|C|484
*
7ZP8|1|b|G|496
7ZP8|1|b|A|497
7ZP8|1|b|G|498
7ZP8|1|b|U|499
7ZP8|1|b|G|500
7ZP8|1|b|A|501
7ZP8|1|b|A|502
7ZP8|1|b|A|503
7ZP8|1|b|A|504
7ZP8|1|b|A|505
7ZP8|1|b|G|506
7ZP8|1|b|A|507
7ZP8|1|b|A|508
7ZP8|1|b|C|509
7ZP8|1|b|C|510
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain q
- 50S ribosomal protein L20
- Chain s
- 50S ribosomal protein L22
- Chain u
- 50S ribosomal protein L24
- Chain z
- Gelation factor
Coloring options: