J3_7ZPQ_003

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

AGAG*CAG*UCGAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7ZPQ_003 not in the Motif Atlas

Homologous match to J3_4V88_032

Geometric discrepancy: 0.0811

The information below is about J3_4V88_032

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_54972.1

Basepair signature

cWW-tWW-F-cWW-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

7ZPQ|1|2|A|760
7ZPQ|1|2|G|761
7ZPQ|1|2|A|762
7ZPQ|1|2|G|763
*
7ZPQ|1|2|C|773
7ZPQ|1|2|A|774
7ZPQ|1|2|G|775
*
7ZPQ|1|2|U|785
7ZPQ|1|2|C|786
7ZPQ|1|2|G|787
7ZPQ|1|2|A|788
7ZPQ|1|2|A|789
7ZPQ|1|2|U|790

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AE

40S ribosomal protein S4-A

Chain AJ

40S ribosomal protein S9-A

Chain AY

40S ribosomal protein S24-A