J3_7ZPQ_006
3D structure
- PDB id
- 7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.47 Å
Loop
- Sequence
- CCAG*CUAGUAA*UGAUUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7ZPQ_006 not in the Motif Atlas
- Homologous match to J3_4V88_035
- Geometric discrepancy: 0.221
- The information below is about J3_4V88_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.1
- Basepair signature
- cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
7ZPQ|1|2|C|1161
7ZPQ|1|2|C|1162
7ZPQ|1|2|A|1163
7ZPQ|1|2|G|1164
*
7ZPQ|1|2|C|1581
7ZPQ|1|2|U|1582
7ZPQ|1|2|A|1583
7ZPQ|1|2|G|1584
7ZPQ|1|2|U|1585
7ZPQ|1|2|A|1586
7ZPQ|1|2|A|1587
*
7ZPQ|1|2|U|1609
7ZPQ|1|2|G|1610
7ZPQ|1|2|A|1611
7ZPQ|1|2|U|1612
7ZPQ|1|2|U|1613
7ZPQ|1|2|A|1614
7ZPQ|1|2|C|1615
7ZPQ|1|2|G|1616
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain AF
- Rps5p
- Chain AQ
- 40S ribosomal protein S16-A
- Chain Ac
- RPS28A isoform 1
Coloring options: