J3_7ZPQ_009

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

CCAGAC*GGGUG*UUAGACG

Length

18 nucleotides

Bulged bases

7ZPQ|1|2|A|1217, 7ZPQ|1|2|G|1445, 7ZPQ|1|2|C|1447

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7ZPQ_009 not in the Motif Atlas

Homologous match to J3_4V88_038

Geometric discrepancy: 0.1656

The information below is about J3_4V88_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_75993.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

7ZPQ|1|2|C|1215
7ZPQ|1|2|C|1216
7ZPQ|1|2|A|1217
7ZPQ|1|2|G|1218
7ZPQ|1|2|A|1219
7ZPQ|1|2|C|1220
*
7ZPQ|1|2|G|1263
7ZPQ|1|2|G|1264
7ZPQ|1|2|G|1265
7ZPQ|1|2|U|1266
7ZPQ|1|2|G|1267
*
7ZPQ|1|2|U|1442
7ZPQ|1|2|U|1443
7ZPQ|1|2|A|1444
7ZPQ|1|2|G|1445
7ZPQ|1|2|A|1446
7ZPQ|1|2|C|1447
7ZPQ|1|2|G|1448

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AK

40S ribosomal protein S10-A

Chain Ad

RPS29A isoform 1

Chain Af

RPS31 isoform 1