J3_7ZTA_005

3D structure

PDB id

7ZTA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of an Escherichia coli 70S ribosome stalled by Tetracenomycin X during translation of an MAAAPQK(C) peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

7ZTA|1|16S1|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7ZTA_005 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.0619

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

7ZTA|1|16S1|C|826
7ZTA|1|16S1|U|827
7ZTA|1|16S1|U|828
7ZTA|1|16S1|G|829
*
7ZTA|1|16S1|C|857
7ZTA|1|16S1|G|858
7ZTA|1|16S1|G|859
7ZTA|1|16S1|A|860
7ZTA|1|16S1|G|861
*
7ZTA|1|16S1|C|868
7ZTA|1|16S1|G|869
7ZTA|1|16S1|U|870
7ZTA|1|16S1|U|871
7ZTA|1|16S1|A|872
7ZTA|1|16S1|A|873
7ZTA|1|16S1|G|874

Current chains

Chain 16S1

16S ribosomal RNA

Nearby chains

Chain S021

30S ribosomal protein S2

Chain S081

30S ribosomal protein S8

Chain S211

30S ribosomal protein S21