J3_7ZTA_013

3D structure

PDB id

7ZTA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of an Escherichia coli 70S ribosome stalled by Tetracenomycin X during translation of an MAAAPQK(C) peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

7ZTA|1|16S1|U|1240, 7ZTA|1|16S1|C|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7ZTA_013 not in the Motif Atlas

Homologous match to J3_5J7L_011

Geometric discrepancy: 0.1319

The information below is about J3_5J7L_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

7ZTA|1|16S1|C|1237
7ZTA|1|16S1|A|1238
7ZTA|1|16S1|A|1239
7ZTA|1|16S1|U|1240
7ZTA|1|16S1|G|1241
*
7ZTA|1|16S1|C|1296
7ZTA|1|16S1|G|1297
7ZTA|1|16S1|U|1298
7ZTA|1|16S1|A|1299
7ZTA|1|16S1|G|1300
7ZTA|1|16S1|U|1301
7ZTA|1|16S1|C|1302
7ZTA|1|16S1|C|1303
*
7ZTA|1|16S1|G|1334
7ZTA|1|16S1|U|1335
7ZTA|1|16S1|C|1336
7ZTA|1|16S1|G|1337

Current chains

Chain 16S1

16S ribosomal RNA

Nearby chains

Chain S071

30S ribosomal protein S7

Chain S131

30S ribosomal protein S13