J3_7ZTA_033

3D structure

PDB id

7ZTA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of an Escherichia coli 70S ribosome stalled by Tetracenomycin X during translation of an MAAAPQK(C) peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

7ZTA|1|23S1|A|504, 7ZTA|1|23S1|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7ZTA_033 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.1053

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

7ZTA|1|23S1|G|30
7ZTA|1|23S1|C|31
*
7ZTA|1|23S1|G|474
7ZTA|1|23S1|C|475
7ZTA|1|23S1|G|476
7ZTA|1|23S1|A|477
7ZTA|1|23S1|A|478
7ZTA|1|23S1|A|479
7ZTA|1|23S1|A|480
7ZTA|1|23S1|G|481
7ZTA|1|23S1|A|482
7ZTA|1|23S1|A|483
7ZTA|1|23S1|C|484
*
7ZTA|1|23S1|G|496
7ZTA|1|23S1|A|497
7ZTA|1|23S1|G|498
7ZTA|1|23S1|U|499
7ZTA|1|23S1|G|500
7ZTA|1|23S1|A|501
7ZTA|1|23S1|A|502
7ZTA|1|23S1|A|503
7ZTA|1|23S1|A|504
7ZTA|1|23S1|A|505
7ZTA|1|23S1|G|506
7ZTA|1|23S1|A|507
7ZTA|1|23S1|A|508
7ZTA|1|23S1|C|509
7ZTA|1|23S1|C|510

Current chains

Chain 23S1

23S ribosomal RNA

Nearby chains

Chain L201

50S ribosomal protein L20

Chain L221

50S ribosomal protein L22

Chain L241

50S ribosomal protein L24