J3_7ZUW_006

3D structure

PDB id

7ZUW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RQT (C1) bound to the stalled ribosome in a disome unit from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CCAG*CUAGUAA*UGAUUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7ZUW_006 not in the Motif Atlas

Homologous match to J3_4V88_035

Geometric discrepancy: 0.1757

The information below is about J3_4V88_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.1

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7ZUW|1|2|C|1161
7ZUW|1|2|C|1162
7ZUW|1|2|A|1163
7ZUW|1|2|G|1164
*
7ZUW|1|2|C|1581
7ZUW|1|2|U|1582
7ZUW|1|2|A|1583
7ZUW|1|2|G|1584
7ZUW|1|2|U|1585
7ZUW|1|2|A|1586
7ZUW|1|2|A|1587
*
7ZUW|1|2|U|1609
7ZUW|1|2|G|1610
7ZUW|1|2|A|1611
7ZUW|1|2|U|1612
7ZUW|1|2|U|1613
7ZUW|1|2|A|1614
7ZUW|1|2|C|1615
7ZUW|1|2|G|1616

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AF

Rps5p

Chain AQ

40S ribosomal protein S16-A

Chain Ac

RPS28A isoform 1