J3_7ZUW_009

3D structure

PDB id

7ZUW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RQT (C1) bound to the stalled ribosome in a disome unit from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CCAGAC*GGGUG*UUAGACG

Length

18 nucleotides

Bulged bases

7ZUW|1|2|A|1217, 7ZUW|1|2|G|1445, 7ZUW|1|2|C|1447

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7ZUW_009 not in the Motif Atlas

Homologous match to J3_8C3A_041

Geometric discrepancy: 0.1265

The information below is about J3_8C3A_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_23728.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

7ZUW|1|2|C|1215
7ZUW|1|2|C|1216
7ZUW|1|2|A|1217
7ZUW|1|2|G|1218
7ZUW|1|2|A|1219
7ZUW|1|2|C|1220
*
7ZUW|1|2|G|1263
7ZUW|1|2|G|1264
7ZUW|1|2|G|1265
7ZUW|1|2|U|1266
7ZUW|1|2|G|1267
*
7ZUW|1|2|U|1442
7ZUW|1|2|U|1443
7ZUW|1|2|A|1444
7ZUW|1|2|G|1445
7ZUW|1|2|A|1446
7ZUW|1|2|C|1447
7ZUW|1|2|G|1448

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AK

40S ribosomal protein S10-A

Chain Ad

RPS29A isoform 1

Chain Af

RPS31 isoform 1