J3_8A5I_003

3D structure

PDB id

8A5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Lincomycin bound to the Listeria monocytogenes 50S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CAAAC*GGGUUGUA*UG

Length

15 nucleotides

Bulged bases

8A5I|1|A|U|300

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8A5I_003 not in the Motif Atlas

Homologous match to J3_4WF9_022

Geometric discrepancy: 0.355

The information below is about J3_4WF9_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97971.2

Basepair signature

cWW-F-F-tSH-cSH-tWH-tWS-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

8A5I|1|A|C|271
8A5I|1|A|A|272
8A5I|1|A|A|273
8A5I|1|A|A|274
8A5I|1|A|C|275
*
8A5I|1|A|G|294
8A5I|1|A|G|295
8A5I|1|A|G|296
8A5I|1|A|U|297
8A5I|1|A|U|298
8A5I|1|A|G|299
8A5I|1|A|U|300
8A5I|1|A|A|301
*
8A5I|1|A|U|415
8A5I|1|A|G|416

Current chains

Chain A

23S ribosomal RNA

Nearby chains