J3_8A5I_008

3D structure

PDB id

8A5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Lincomycin bound to the Listeria monocytogenes 50S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UCGGGAC*GACAA*UA

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8A5I_008 not in the Motif Atlas

Homologous match to J3_7A0S_018

Geometric discrepancy: 0.096

The information below is about J3_7A0S_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

10

Unit IDs

8A5I|1|A|U|1388
8A5I|1|A|C|1389
8A5I|1|A|G|1390
8A5I|1|A|G|1391
8A5I|1|A|G|1392
8A5I|1|A|A|1393
8A5I|1|A|C|1394
*
8A5I|1|A|G|1425
8A5I|1|A|A|1426
8A5I|1|A|C|1427
8A5I|1|A|A|1428
8A5I|1|A|A|1429
*
8A5I|1|A|U|1446
8A5I|1|A|A|1447

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain W

50S ribosomal protein L23