J3_8AGU_011
3D structure
- PDB id
- 8AGU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast RQC complex in state E
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CA*UAACU*AG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8AGU_011 not in the Motif Atlas
- Homologous match to J3_8C3A_054
- Geometric discrepancy: 0.1555
- The information below is about J3_8C3A_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_16991.1
- Basepair signature
- cWW-F-cWW-F-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
8AGU|1|f|C|1631
8AGU|1|f|A|1632
*
8AGU|1|f|U|1641
8AGU|1|f|A|1642
8AGU|1|f|A|1643
8AGU|1|f|C|1644
8AGU|1|f|U|1645
*
8AGU|1|f|A|1810
8AGU|1|f|G|1811
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain M
- 60S ribosomal protein L27-A
- Chain T
- 60S ribosomal protein L34-A
- Chain X
- BJ4_G0032190.mRNA.1.CDS.1
- Chain d
- RPL41A isoform 1
Coloring options: