J3_8B2L_004
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- UGA(A2M)C(PSU)A*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 8B2L|1|A3|G|934
- QA status
- Modified nucleotides: A2M, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8B2L_004 not in the Motif Atlas
- Homologous match to J3_8C3A_003
- Geometric discrepancy: 0.1688
- The information below is about J3_8C3A_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_39238.5
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8B2L|1|A3|U|824
8B2L|1|A3|G|825
8B2L|1|A3|A|826
8B2L|1|A3|A2M|827
8B2L|1|A3|C|828
8B2L|1|A3|PSU|829
8B2L|1|A3|A|830
*
8B2L|1|A3|U|915
8B2L|1|A3|A|916
8B2L|1|A3|G|917
*
8B2L|1|A3|C|933
8B2L|1|A3|G|934
8B2L|1|A3|A|935
8B2L|1|A3|A|936
Current chains
- Chain A3
- 25S rRNA
Nearby chains
- Chain F3
- Ribosomal protein L15
- Chain V3
- Ribosomal protein L37
- Chain X3
- 60S ribosomal protein L39-3
- Chain o3
- uL2 (60S ribosomal protein L8)
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