J3_8B2L_006

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGAAGAG*CAA*UCUG

Length

14 nucleotides

Bulged bases

8B2L|1|A3|A|1493

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8B2L_006 not in the Motif Atlas

Homologous match to J3_5TBW_008

Geometric discrepancy: 0.1004

The information below is about J3_5TBW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

8B2L|1|A3|C|1490
8B2L|1|A3|G|1491
8B2L|1|A3|A|1492
8B2L|1|A3|A|1493
8B2L|1|A3|G|1494
8B2L|1|A3|A|1495
8B2L|1|A3|G|1496
*
8B2L|1|A3|C|1863
8B2L|1|A3|A|1864
8B2L|1|A3|A|1865
*
8B2L|1|A3|U|1877
8B2L|1|A3|C|1878
8B2L|1|A3|U|1879
8B2L|1|A3|G|1880

Current chains

Chain A3

25S rRNA

Nearby chains

Chain H3

Ribosomal protein L19

Chain T3

60S ribosomal protein L34