J3_8B2L_012

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UAUC*GUU*ACCAAUA

Length

14 nucleotides

Bulged bases

8B2L|1|A3|A|2890, 8B2L|1|A3|U|2891

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8B2L_012 not in the Motif Atlas

Homologous match to J3_8C3A_011

Geometric discrepancy: 0.0705

The information below is about J3_8C3A_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_98597.1

Basepair signature

cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

2

Unit IDs

8B2L|1|A3|U|2889
8B2L|1|A3|A|2890
8B2L|1|A3|U|2891
8B2L|1|A3|C|2892
*
8B2L|1|A3|G|2917
8B2L|1|A3|U|2918
8B2L|1|A3|U|2919
*
8B2L|1|A3|A|2933
8B2L|1|A3|C|2934
8B2L|1|A3|C|2935
8B2L|1|A3|A|2936
8B2L|1|A3|A|2937
8B2L|1|A3|U|2938
8B2L|1|A3|A|2939

Current chains

Chain A3

25S rRNA

Nearby chains

Chain d3

uL13 (60S ribosomal protein L13a)

Chain e3

60S ribosomal protein L23

Chain r3

uL3 (60S ribosomal protein L3)