J3_8B2L_014
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- AGAG*CAA*UCUGUAU
- Length
- 14 nucleotides
- Bulged bases
- 8B2L|1|h1|C|789
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8B2L_014 not in the Motif Atlas
- Homologous match to J3_4V88_032
- Geometric discrepancy: 0.3064
- The information below is about J3_4V88_032
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_54972.1
- Basepair signature
- cWW-tWW-F-cWW-F-tHS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
8B2L|1|h1|A|764
8B2L|1|h1|G|765
8B2L|1|h1|A|766
8B2L|1|h1|G|767
*
8B2L|1|h1|C|777
8B2L|1|h1|A|778
8B2L|1|h1|A|779
*
8B2L|1|h1|U|788
8B2L|1|h1|C|789
8B2L|1|h1|U|790
8B2L|1|h1|G|791
8B2L|1|h1|U|792
8B2L|1|h1|A|793
8B2L|1|h1|U|794
Current chains
- Chain h1
- 18S rRNA
Nearby chains
- Chain A1
- 40S ribosomal protein S4
- Chain H1
- 40S ribosomal protein S24
- Chain b1
- 40S ribosomal protein S9-2-like
Coloring options: