J3_8B2L_022
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CACUG*CGUGAUGG*CG(A2M)G
- Length
- 17 nucleotides
- Bulged bases
- 8B2L|1|h1|U|1478, 8B2L|1|h1|G|1545
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8B2L_022 not in the Motif Atlas
- Homologous match to J3_8C3A_044
- Geometric discrepancy: 0.1103
- The information below is about J3_8C3A_044
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.4
- Basepair signature
- cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
8B2L|1|h1|C|1475
8B2L|1|h1|A|1476
8B2L|1|h1|C|1477
8B2L|1|h1|U|1478
8B2L|1|h1|G|1479
*
8B2L|1|h1|C|1539
8B2L|1|h1|G|1540
8B2L|1|h1|U|1541
8B2L|1|h1|G|1542
8B2L|1|h1|A|1543
8B2L|1|h1|U|1544
8B2L|1|h1|G|1545
8B2L|1|h1|G|1546
*
8B2L|1|h1|C|1577
8B2L|1|h1|G|1578
8B2L|1|h1|A2M|1579
8B2L|1|h1|G|1580
Current chains
- Chain h1
- 18S rRNA
Nearby chains
- Chain E1
- 40S ribosomal protein S19-3
- Chain I1
- 40S ribosomal protein S25
- Chain U1
- 40S ribosomal protein S18
- Chain d1
- 40S ribosomal protein S5-like
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