J3_8B2L_032
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GAAA*UCAUAA(OMC)*GUC
- Length
- 14 nucleotides
- Bulged bases
- 8B2L|1|A3|U|1846, 8B2L|1|A3|A|1847
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8B2L_032 not in the Motif Atlas
- Homologous match to J3_8C3A_007
- Geometric discrepancy: 0.0873
- The information below is about J3_8C3A_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_74051.1
- Basepair signature
- cWW-tSH-tWW-tHW-F-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
8B2L|1|A3|G|1499
8B2L|1|A3|A|1500
8B2L|1|A3|A|1501
8B2L|1|A3|A|1502
*
8B2L|1|A3|U|1843
8B2L|1|A3|C|1844
8B2L|1|A3|A|1845
8B2L|1|A3|U|1846
8B2L|1|A3|A|1847
8B2L|1|A3|A|1848
8B2L|1|A3|OMC|1849
*
8B2L|1|A3|G|1858
8B2L|1|A3|U|1859
8B2L|1|A3|C|1860
Current chains
- Chain A3
- 25S rRNA
Nearby chains
- Chain B3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain T3
- 60S ribosomal protein L34
- Chain V3
- Ribosomal protein L37
- Chain X3
- 60S ribosomal protein L39-3
Coloring options: