J3_8B2L_033
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- (OMU)CGAUC*GGAAU*AA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8B2L_033 not in the Motif Atlas
- Homologous match to J3_8P9A_055
- Geometric discrepancy: 0.0764
- The information below is about J3_8P9A_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_94309.2
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 10
Unit IDs
8B2L|1|A3|OMU|1537
8B2L|1|A3|C|1538
8B2L|1|A3|G|1539
8B2L|1|A3|A|1540
8B2L|1|A3|U|1541
8B2L|1|A3|C|1542
*
8B2L|1|A3|G|1596
8B2L|1|A3|G|1597
8B2L|1|A3|A|1598
8B2L|1|A3|A|1599
8B2L|1|A3|U|1600
*
8B2L|1|A3|A|1617
8B2L|1|A3|A|1618
Current chains
- Chain A3
- 25S rRNA
Nearby chains
- Chain B3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain T3
- 60S ribosomal protein L34
- Chain W3
- 60S ribosomal protein L38
- Chain X3
- 60S ribosomal protein L39-3
- Chain k3
- 60S ribosomal protein L23a
Coloring options: