J3_8B2L_034

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GA*UUAGG*CC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8B2L_034 not in the Motif Atlas

Homologous match to J3_8C3A_054

Geometric discrepancy: 0.299

The information below is about J3_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16991.1

Basepair signature

cWW-F-cWW-F-F-cWW

Number of instances in this motif group

3

Unit IDs

8B2L|1|A3|G|1635
8B2L|1|A3|A|1636
*
8B2L|1|A3|U|1645
8B2L|1|A3|U|1646
8B2L|1|A3|A|1647
8B2L|1|A3|G|1648
8B2L|1|A3|G|1649
*
8B2L|1|A3|C|1816
8B2L|1|A3|C|1817

Current chains

Chain A3

25S rRNA

Nearby chains

Chain M3

eL27 (60S ribosomal protein L27)

Chain T3

60S ribosomal protein L34