J3_8B2L_038
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- AC*GAUACUU*AGUCU
- Length
- 14 nucleotides
- Bulged bases
- 8B2L|1|B3|U|63, 8B2L|1|B3|C|65
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8B2L_038 not in the Motif Atlas
- Homologous match to J3_8C3A_060
- Geometric discrepancy: 0.0961
- The information below is about J3_8C3A_060
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38265.2
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F
- Number of instances in this motif group
- 8
Unit IDs
8B2L|1|B3|A|47
8B2L|1|B3|C|48
*
8B2L|1|B3|G|61
8B2L|1|B3|A|62
8B2L|1|B3|U|63
8B2L|1|B3|A|64
8B2L|1|B3|C|65
8B2L|1|B3|U|66
8B2L|1|B3|U|67
*
8B2L|1|B3|A|99
8B2L|1|B3|G|100
8B2L|1|B3|U|101
8B2L|1|B3|C|102
8B2L|1|B3|U|103
Current chains
- Chain B3
- 5.8S rRNA
Nearby chains
- Chain A3
- Large subunit ribosomal RNA; LSU rRNA
- Chain V3
- Ribosomal protein L37
- Chain X3
- 60S ribosomal protein L39-3
- Chain k3
- 60S ribosomal protein L23a
- Chain n3
- 60S ribosomal protein L35-like
Coloring options: