J3_8B2L_039
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- UCAUAC*GG*UG
- Length
- 10 nucleotides
- Bulged bases
- 8B2L|1|C3|U|12
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8B2L_039 not in the Motif Atlas
- Homologous match to J3_8P9A_066
- Geometric discrepancy: 0.1594
- The information below is about J3_8P9A_066
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_26985.2
- Basepair signature
- cWW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 8
Unit IDs
8B2L|1|C3|U|9
8B2L|1|C3|C|10
8B2L|1|C3|A|11
8B2L|1|C3|U|12
8B2L|1|C3|A|13
8B2L|1|C3|C|14
*
8B2L|1|C3|G|65
8B2L|1|C3|G|66
*
8B2L|1|C3|U|109
8B2L|1|C3|G|110
Current chains
- Chain C3
- 5S rRNA
Nearby chains
- Chain A3
- Large subunit ribosomal RNA; LSU rRNA
- Chain J3
- 60S ribosomal protein L21-1-like
- Chain g3
- uL16 (60S ribosomal protein L10)
- Chain h3
- 60S ribosomal protein L5-like
- Chain t3
- uL5 (60S ribosomal protein L11)
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