J3_8B2L_044
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- AU(OMU)C*GAACAACUG*CAUU(PSU)
- Length
- 18 nucleotides
- Bulged bases
- 8B2L|1|h1|C|937
- QA status
- Modified nucleotides: OMU, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8B2L_044 not in the Motif Atlas
- Homologous match to J3_8P9A_074
- Geometric discrepancy: 0.1595
- The information below is about J3_8P9A_074
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23895.2
- Basepair signature
- cWW-cWW-cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8B2L|1|h1|A|884
8B2L|1|h1|U|885
8B2L|1|h1|OMU|886
8B2L|1|h1|C|887
*
8B2L|1|h1|G|931
8B2L|1|h1|A|932
8B2L|1|h1|A|933
8B2L|1|h1|C|934
8B2L|1|h1|A|935
8B2L|1|h1|A|936
8B2L|1|h1|C|937
8B2L|1|h1|U|938
8B2L|1|h1|G|939
*
8B2L|1|h1|C|946
8B2L|1|h1|A|947
8B2L|1|h1|U|948
8B2L|1|h1|U|949
8B2L|1|h1|PSU|950
Current chains
- Chain h1
- 18S rRNA
Nearby chains
- Chain F1
- 40S ribosomal protein S3a
- Chain J1
- 40S ribosomal protein S26
- Chain S1
- 40S ribosomal protein S14-2
- Chain W1
- 30S ribosomal protein S15, chloroplastic
- Chain a3
- 60S ribosomal protein L37a
Coloring options: