J3_8B2L_047

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

(OMC)CAGAC*GGGUG*(OMU)UAGAUG

Length

18 nucleotides

Bulged bases

8B2L|1|h1|A|1220, 8B2L|1|h1|G|1450, 8B2L|1|h1|U|1452

QA status

Modified nucleotides: OMC, OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8B2L_047 not in the Motif Atlas

Homologous match to J3_8C3A_041

Geometric discrepancy: 0.1072

The information below is about J3_8C3A_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_23728.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

8B2L|1|h1|OMC|1218
8B2L|1|h1|C|1219
8B2L|1|h1|A|1220
8B2L|1|h1|G|1221
8B2L|1|h1|A|1222
8B2L|1|h1|C|1223
*
8B2L|1|h1|G|1266
8B2L|1|h1|G|1267
8B2L|1|h1|G|1268
8B2L|1|h1|U|1269
8B2L|1|h1|G|1270
*
8B2L|1|h1|OMU|1447
8B2L|1|h1|U|1448
8B2L|1|h1|A|1449
8B2L|1|h1|G|1450
8B2L|1|h1|A|1451
8B2L|1|h1|U|1452
8B2L|1|h1|G|1453

Current chains

Chain h1

18S rRNA

Nearby chains

Chain N1

ubiquitin-40S ribosomal protein S27a-like

Chain V1

40S ribosomal protein S29

Chain l1

40S ribosomal protein S10-1-like