J3_8B5L_007
3D structure
- PDB id
- 8B5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- GAAG*CCAUAUC*GUC
- Length
- 14 nucleotides
- Bulged bases
- 8B5L|1|5|U|2631, 8B5L|1|5|A|2632
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8B5L_007 not in the Motif Atlas
- Homologous match to J3_8C3A_007
- Geometric discrepancy: 0.1381
- The information below is about J3_8C3A_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_74051.1
- Basepair signature
- cWW-tSH-tWW-tHW-F-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
8B5L|1|5|G|2245
8B5L|1|5|A|2246
8B5L|1|5|A|2247
8B5L|1|5|G|2248
*
8B5L|1|5|C|2628
8B5L|1|5|C|2629
8B5L|1|5|A|2630
8B5L|1|5|U|2631
8B5L|1|5|A|2632
8B5L|1|5|U|2633
8B5L|1|5|C|2634
*
8B5L|1|5|G|2643
8B5L|1|5|U|2644
8B5L|1|5|C|2645
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain g
- 60S ribosomal protein L34
- Chain j
- Ribosomal protein L37
- Chain l
- 60S ribosomal protein L39-like
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