J3_8B5L_011
3D structure
- PDB id
- 8B5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- CGG*CUGAC*GGACAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8B5L_011 not in the Motif Atlas
- Geometric match to J3_7A0S_009
- Geometric discrepancy: 0.2728
- The information below is about J3_7A0S_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17460.1
- Basepair signature
- cWW-tHH-cWW-F-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8B5L|1|5|C|3669
8B5L|1|5|G|3670
8B5L|1|5|G|3671
*
8B5L|1|5|C|3802
8B5L|1|5|U|3803
8B5L|1|5|G|3804
8B5L|1|5|A|3805
8B5L|1|5|C|3806
*
8B5L|1|5|G|3914
8B5L|1|5|G|3915
8B5L|1|5|A|3916
8B5L|1|5|C|3917
8B5L|1|5|A|3918
8B5L|1|5|G|3919
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain A
- Ribosomal protein L8
- Chain G
- 60S ribosomal protein L7a
- Chain N
- Ribosomal protein L15
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