J3_8B5L_015
3D structure
- PDB id
- 8B5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- UAUC*GUU*ACUAAUA
- Length
- 14 nucleotides
- Bulged bases
- 8B5L|1|5|A|4210, 8B5L|1|5|U|4211
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8B5L_015 not in the Motif Atlas
- Homologous match to J3_5TBW_014
- Geometric discrepancy: 0.0982
- The information below is about J3_5TBW_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_98597.1
- Basepair signature
- cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW
- Number of instances in this motif group
- 2
Unit IDs
8B5L|1|5|U|4209
8B5L|1|5|A|4210
8B5L|1|5|U|4211
8B5L|1|5|C|4212
*
8B5L|1|5|G|4237
8B5L|1|5|U|4238
8B5L|1|5|U|4239
*
8B5L|1|5|A|4253
8B5L|1|5|C|4254
8B5L|1|5|U|4255
8B5L|1|5|A|4256
8B5L|1|5|A|4257
8B5L|1|5|U|4258
8B5L|1|5|A|4259
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain B
- Ribosomal protein L3
- Chain O
- 60S ribosomal protein L13a
- Chain V
- 60S ribosomal protein L23
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