J3_8BH6_001

3D structure

PDB id

8BH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mature 30S ribosomal subunit from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUAA*UGCAG*CAUUAAG

Length

16 nucleotides

Bulged bases

8BH6|1|a|U|881

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BH6_001 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.1784

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

8BH6|1|a|C|834
8BH6|1|a|U|835
8BH6|1|a|A|836
8BH6|1|a|A|837
*
8BH6|1|a|U|867
8BH6|1|a|G|868
8BH6|1|a|C|869
8BH6|1|a|A|870
8BH6|1|a|G|871
*
8BH6|1|a|C|878
8BH6|1|a|A|879
8BH6|1|a|U|880
8BH6|1|a|U|881
8BH6|1|a|A|882
8BH6|1|a|A|883
8BH6|1|a|G|884

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain b

30S ribosomal protein S2

Chain h

30S ribosomal protein S8