J3_8BHF_003
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGAACUA*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 8BHF|1|A2|A|1534, 8BHF|1|A2|G|1641
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BHF_003 not in the Motif Atlas
- Homologous match to J3_8C3A_003
- Geometric discrepancy: 0.0653
- The information below is about J3_8C3A_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_39238.5
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8BHF|1|A2|U|1531
8BHF|1|A2|G|1532
8BHF|1|A2|A|1533
8BHF|1|A2|A|1534
8BHF|1|A2|C|1535
8BHF|1|A2|U|1536
8BHF|1|A2|A|1537
*
8BHF|1|A2|U|1622
8BHF|1|A2|A|1623
8BHF|1|A2|G|1624
*
8BHF|1|A2|C|1640
8BHF|1|A2|G|1641
8BHF|1|A2|A|1642
8BHF|1|A2|A|1643
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain A1
- Ribosomal protein L15
- Chain W1
- Ribosomal protein L37
- Chain Y1
- 60S ribosomal protein L39-like
- Chain j3
- 60S ribosomal protein L8
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