J3_8BHF_007

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAG*CCAUAUC*GUC

Length

14 nucleotides

Bulged bases

8BHF|1|A2|U|2791, 8BHF|1|A2|A|2792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BHF_007 not in the Motif Atlas

Homologous match to J3_5TBW_009

Geometric discrepancy: 0.141

The information below is about J3_5TBW_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_74051.1

Basepair signature

cWW-tSH-tWW-tHW-F-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

8BHF|1|A2|G|2405
8BHF|1|A2|A|2406
8BHF|1|A2|A|2407
8BHF|1|A2|G|2408
*
8BHF|1|A2|C|2788
8BHF|1|A2|C|2789
8BHF|1|A2|A|2790
8BHF|1|A2|U|2791
8BHF|1|A2|A|2792
8BHF|1|A2|U|2793
8BHF|1|A2|C|2794
*
8BHF|1|A2|G|2803
8BHF|1|A2|U|2804
8BHF|1|A2|C|2805

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain T1

60S ribosomal protein L34

Chain W1

Ribosomal protein L37

Chain Y1

60S ribosomal protein L39-like