J3_8BHF_010
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGGG*CGCUUCUGGCGCCAAG*CGAC
- Length
- 24 nucleotides
- Bulged bases
- 8BHF|1|A2|C|4109, 8BHF|1|A2|U|4110, 8BHF|1|A2|U|4111, 8BHF|1|A2|G|4114
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BHF_010 not in the Motif Atlas
- Homologous match to J3_8P9A_060
- Geometric discrepancy: 0.2559
- The information below is about J3_8P9A_060
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76247.1
- Basepair signature
- cWW-F-tHH-F-tHS-cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8BHF|1|A2|G|4085
8BHF|1|A2|G|4086
8BHF|1|A2|G|4087
8BHF|1|A2|G|4088
*
8BHF|1|A2|C|4107
8BHF|1|A2|G|4108
8BHF|1|A2|C|4109
8BHF|1|A2|U|4110
8BHF|1|A2|U|4111
8BHF|1|A2|C|4112
8BHF|1|A2|U|4113
8BHF|1|A2|G|4114
8BHF|1|A2|G|4115
8BHF|1|A2|C|4116
8BHF|1|A2|G|4117
8BHF|1|A2|C|4118
8BHF|1|A2|C|4119
8BHF|1|A2|A|4120
8BHF|1|A2|A|4121
8BHF|1|A2|G|4122
*
8BHF|1|A2|C|4141
8BHF|1|A2|G|4142
8BHF|1|A2|A|4143
8BHF|1|A2|C|4144
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain K1
- Ribosomal protein L23/L25 N-terminal domain-containing protein
- Chain M1
- 60S ribosomal protein L27
- Chain P1
- 60S ribosomal protein L30
- Chain T1
- 60S ribosomal protein L34
- Chain c1
- 60S ribosomal protein L37a
- Chain j3
- 60S ribosomal protein L8
- Chain p3
- 60S ribosomal protein L7a
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