J3_8BHF_011
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUC*GAG*CAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 8BHF|1|A2|A|4266
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BHF_011 not in the Motif Atlas
- Homologous match to J3_5TBW_013
- Geometric discrepancy: 0.0805
- The information below is about J3_5TBW_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91491.5
- Basepair signature
- cWW-F-tWW-tHW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8BHF|1|A2|C|4227
8BHF|1|A2|U|4228
8BHF|1|A2|C|4229
*
8BHF|1|A2|G|4253
8BHF|1|A2|A|4254
8BHF|1|A2|G|4255
*
8BHF|1|A2|C|4264
8BHF|1|A2|A|4265
8BHF|1|A2|A|4266
8BHF|1|A2|A|4267
8BHF|1|A2|A|4268
8BHF|1|A2|G|4269
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain 21
- Transfer RNA; tRNA
- Chain B2
- 5S ribosomal RNA; 5S rRNA
- Chain G1
- 60S ribosomal protein L21
- Chain m3
- 60S ribosomal protein L5
- Chain s3
- 60S ribosomal protein L11
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