J3_8BHF_012

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

8BHF|1|A2|A|4450, 8BHF|1|A2|U|4451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BHF_012 not in the Motif Atlas

Homologous match to J3_5TBW_014

Geometric discrepancy: 0.0873

The information below is about J3_5TBW_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_98597.1

Basepair signature

cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

2

Unit IDs

8BHF|1|A2|U|4449
8BHF|1|A2|A|4450
8BHF|1|A2|U|4451
8BHF|1|A2|C|4452
*
8BHF|1|A2|G|4477
8BHF|1|A2|U|4478
8BHF|1|A2|U|4479
*
8BHF|1|A2|A|4493
8BHF|1|A2|C|4494
8BHF|1|A2|U|4495
8BHF|1|A2|A|4496
8BHF|1|A2|A|4497
8BHF|1|A2|U|4498
8BHF|1|A2|A|4499

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain I1

60S ribosomal protein L23

Chain k3

Ribosomal protein L3