J3_8BHF_014

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGAG*CAG*CUGGAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BHF_014 not in the Motif Atlas

Homologous match to J3_4V88_032

Geometric discrepancy: 0.2177

The information below is about J3_4V88_032

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_54972.1

Basepair signature

cWW-tWW-F-cWW-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

8BHF|1|A3|A|816
8BHF|1|A3|G|817
8BHF|1|A3|A|818
8BHF|1|A3|G|819
*
8BHF|1|A3|C|829
8BHF|1|A3|A|830
8BHF|1|A3|G|831
*
8BHF|1|A3|C|843
8BHF|1|A3|U|844
8BHF|1|A3|G|845
8BHF|1|A3|G|846
8BHF|1|A3|A|847
8BHF|1|A3|U|848

Current chains

Chain A3

18S ribosomal RNA

Nearby chains

Chain F3

40S ribosomal protein S4

Chain K3

Ribosomal protein S9 (Predicted)

Chain Z3

40S ribosomal protein S24