J3_8BHF_017

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCAG*CCAGUAA*UGAUUAAG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BHF_017 not in the Motif Atlas

Homologous match to J3_4V88_035

Geometric discrepancy: 0.1219

The information below is about J3_4V88_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.1

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8BHF|1|A3|C|1218
8BHF|1|A3|C|1219
8BHF|1|A3|A|1220
8BHF|1|A3|G|1221
*
8BHF|1|A3|C|1645
8BHF|1|A3|C|1646
8BHF|1|A3|A|1647
8BHF|1|A3|G|1648
8BHF|1|A3|U|1649
8BHF|1|A3|A|1650
8BHF|1|A3|A|1651
*
8BHF|1|A3|U|1673
8BHF|1|A3|G|1674
8BHF|1|A3|A|1675
8BHF|1|A3|U|1676
8BHF|1|A3|U|1677
8BHF|1|A3|A|1678
8BHF|1|A3|A|1679
8BHF|1|A3|G|1680

Current chains

Chain A3

18S ribosomal RNA

Nearby chains

Chain G3

Ribosomal protein S5

Chain R3

Ribosomal protein S16

Chain d3

Ribosomal protein S28