J3_8BHF_020

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCGGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

8BHF|1|A3|G|1274, 8BHF|1|A3|G|1507, 8BHF|1|A3|U|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BHF_020 not in the Motif Atlas

Homologous match to J3_4V88_038

Geometric discrepancy: 0.1151

The information below is about J3_4V88_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_75993.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

8BHF|1|A3|C|1272
8BHF|1|A3|C|1273
8BHF|1|A3|G|1274
8BHF|1|A3|G|1275
8BHF|1|A3|A|1276
8BHF|1|A3|C|1277
*
8BHF|1|A3|G|1320
8BHF|1|A3|G|1321
8BHF|1|A3|G|1322
8BHF|1|A3|U|1323
8BHF|1|A3|G|1324
*
8BHF|1|A3|U|1504
8BHF|1|A3|U|1505
8BHF|1|A3|A|1506
8BHF|1|A3|G|1507
8BHF|1|A3|A|1508
8BHF|1|A3|U|1509
8BHF|1|A3|G|1510

Current chains

Chain A3

18S ribosomal RNA

Nearby chains

Chain L3

Plectin/S10 N-terminal domain-containing protein

Chain e3

40S ribosomal protein S29

Chain g3

Ubiquitin-40S ribosomal protein S27a