J3_8BHF_033

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UG*CGACC*GA

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BHF_033 not in the Motif Atlas

Homologous match to J3_8C3A_054

Geometric discrepancy: 0.2541

The information below is about J3_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16991.1

Basepair signature

cWW-F-cWW-F-F-cWW

Number of instances in this motif group

3

Unit IDs

8BHF|1|A2|U|2578
8BHF|1|A2|G|2579
*
8BHF|1|A2|C|2588
8BHF|1|A2|G|2589
8BHF|1|A2|A|2590
8BHF|1|A2|C|2591
8BHF|1|A2|C|2592
*
8BHF|1|A2|G|2759
8BHF|1|A2|A|2760

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain M1

60S ribosomal protein L27

Chain T1

60S ribosomal protein L34