J3_8BHF_042
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CCAUAC*GG*UG
- Length
- 10 nucleotides
- Bulged bases
- 8BHF|1|B2|U|12
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BHF_042 not in the Motif Atlas
- Homologous match to J3_8P9A_066
- Geometric discrepancy: 0.0936
- The information below is about J3_8P9A_066
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_26985.1
- Basepair signature
- cWW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8BHF|1|B2|C|9
8BHF|1|B2|C|10
8BHF|1|B2|A|11
8BHF|1|B2|U|12
8BHF|1|B2|A|13
8BHF|1|B2|C|14
*
8BHF|1|B2|G|65
8BHF|1|B2|G|66
*
8BHF|1|B2|U|109
8BHF|1|B2|G|110
Current chains
- Chain B2
- 5S ribosomal RNA
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain G1
- 60S ribosomal protein L21
- Chain m3
- 60S ribosomal protein L5
- Chain r3
- Ribosomal protein L10
Coloring options: