J3_8BHF_043
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AC*GAGAAUU*ACACU
- Length
- 14 nucleotides
- Bulged bases
- 8BHF|1|C2|A|62, 8BHF|1|C2|U|63
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BHF_043 not in the Motif Atlas
- Homologous match to J3_8C3A_060
- Geometric discrepancy: 0.1679
- The information below is about J3_8C3A_060
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38265.2
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F
- Number of instances in this motif group
- 8
Unit IDs
8BHF|1|C2|A|44
8BHF|1|C2|C|45
*
8BHF|1|C2|G|58
8BHF|1|C2|A|59
8BHF|1|C2|G|60
8BHF|1|C2|A|61
8BHF|1|C2|A|62
8BHF|1|C2|U|63
8BHF|1|C2|U|64
*
8BHF|1|C2|A|95
8BHF|1|C2|C|96
8BHF|1|C2|A|97
8BHF|1|C2|C|98
8BHF|1|C2|U|99
Current chains
- Chain C2
- 5.8S ribosomal RNA
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain K1
- Ribosomal protein L23/L25 N-terminal domain-containing protein
- Chain U1
- 60S ribosomal protein L35
- Chain W1
- Ribosomal protein L37
- Chain Y1
- 60S ribosomal protein L39-like
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