J3_8BQD_017
3D structure
- PDB id
- 8BQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome in complex with Map1 (conformation 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UGAACUA*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 8BQD|1|BQ|A|817, 8BQD|1|BQ|G|924
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BQD_017 not in the Motif Atlas
- Homologous match to J3_8C3A_003
- Geometric discrepancy: 0.0969
- The information below is about J3_8C3A_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_39238.5
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8BQD|1|BQ|U|814
8BQD|1|BQ|G|815
8BQD|1|BQ|A|816
8BQD|1|BQ|A|817
8BQD|1|BQ|C|818
8BQD|1|BQ|U|819
8BQD|1|BQ|A|820
*
8BQD|1|BQ|U|905
8BQD|1|BQ|A|906
8BQD|1|BQ|G|907
*
8BQD|1|BQ|C|923
8BQD|1|BQ|G|924
8BQD|1|BQ|A|925
8BQD|1|BQ|A|926
Current chains
- Chain BQ
- 25S rRNA
Nearby chains
- Chain AF
- 60S ribosomal protein L37-A
- Chain AL
- 60S ribosomal protein L39
- Chain AQ
- 60S ribosomal protein L15-A
- Chain AW
- 60S ribosomal protein L2-A
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