J3_8BQD_024

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CA*UAACU*AG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BQD_024 not in the Motif Atlas

Homologous match to J3_8C3A_054

Geometric discrepancy: 0.1323

The information below is about J3_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16991.1

Basepair signature

cWW-F-cWW-F-F-cWW

Number of instances in this motif group

3

Unit IDs

8BQD|1|BQ|C|1631
8BQD|1|BQ|A|1632
*
8BQD|1|BQ|U|1641
8BQD|1|BQ|A|1642
8BQD|1|BQ|A|1643
8BQD|1|BQ|C|1644
8BQD|1|BQ|U|1645
*
8BQD|1|BQ|A|1810
8BQD|1|BQ|G|1811

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AI

RPL38 isoform 1

Chain AN

60S ribosomal protein L27-A

Chain BN

60S ribosomal protein L34-A