J3_8BQD_026

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AGCU*ACGUUCUAGCAUUCAAG*UGAU

Length

25 nucleotides

Bulged bases

8BQD|1|BQ|G|2549, 8BQD|1|BQ|U|2550, 8BQD|1|BQ|U|2551, 8BQD|1|BQ|A|2554, 8BQD|1|BQ|C|2560

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BQD_026 not in the Motif Atlas

Homologous match to J3_8P9A_060

Geometric discrepancy: 0.1973

The information below is about J3_8P9A_060

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28639.1

Basepair signature

cWW-tSS-F-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

8BQD|1|BQ|A|2529
8BQD|1|BQ|G|2530
8BQD|1|BQ|C|2531
8BQD|1|BQ|U|2532
*
8BQD|1|BQ|A|2547
8BQD|1|BQ|C|2548
8BQD|1|BQ|G|2549
8BQD|1|BQ|U|2550
8BQD|1|BQ|U|2551
8BQD|1|BQ|C|2552
8BQD|1|BQ|U|2553
8BQD|1|BQ|A|2554
8BQD|1|BQ|G|2555
8BQD|1|BQ|C|2556
8BQD|1|BQ|A|2557
8BQD|1|BQ|U|2558
8BQD|1|BQ|U|2559
8BQD|1|BQ|C|2560
8BQD|1|BQ|A|2561
8BQD|1|BQ|A|2562
8BQD|1|BQ|G|2563
*
8BQD|1|BQ|U|2578
8BQD|1|BQ|G|2579
8BQD|1|BQ|A|2580
8BQD|1|BQ|U|2581

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AA

60S ribosomal protein L8-A

Chain AH

60S ribosomal protein L25

Chain AN

60S ribosomal protein L27-A

Chain AT

60S ribosomal protein L43-A

Chain AW

60S ribosomal protein L2-A

Chain AY

60S ribosomal protein L30

Chain BN

60S ribosomal protein L34-A