J3_8BQD_028
3D structure
- PDB id
- 8BQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome in complex with Map1 (conformation 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UAUC*GUU*ACUAAUA
- Length
- 14 nucleotides
- Bulged bases
- 8BQD|1|BQ|A|2887, 8BQD|1|BQ|U|2888
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BQD_028 not in the Motif Atlas
- Homologous match to J3_5TBW_014
- Geometric discrepancy: 0.0938
- The information below is about J3_5TBW_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_98597.1
- Basepair signature
- cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW
- Number of instances in this motif group
- 2
Unit IDs
8BQD|1|BQ|U|2886
8BQD|1|BQ|A|2887
8BQD|1|BQ|U|2888
8BQD|1|BQ|C|2889
*
8BQD|1|BQ|G|2914
8BQD|1|BQ|U|2915
8BQD|1|BQ|U|2916
*
8BQD|1|BQ|A|2930
8BQD|1|BQ|C|2931
8BQD|1|BQ|U|2932
8BQD|1|BQ|A|2933
8BQD|1|BQ|A|2934
8BQD|1|BQ|U|2935
8BQD|1|BQ|A|2936
Current chains
- Chain BQ
- 25S rRNA
Nearby chains
- Chain AB
- 60S ribosomal protein L23-A
- Chain AU
- 60S ribosomal protein L16-A
- Chain BA
- 60S ribosomal protein L3
Coloring options: