J3_8BQX_006

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCAG*CUAGUAA*UGAUUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BQX_006 not in the Motif Atlas

Homologous match to J3_4V88_035

Geometric discrepancy: 0.2004

The information below is about J3_4V88_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.1

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8BQX|1|2|C|1161
8BQX|1|2|C|1162
8BQX|1|2|A|1163
8BQX|1|2|G|1164
*
8BQX|1|2|C|1581
8BQX|1|2|U|1582
8BQX|1|2|A|1583
8BQX|1|2|G|1584
8BQX|1|2|U|1585
8BQX|1|2|A|1586
8BQX|1|2|A|1587
*
8BQX|1|2|U|1609
8BQX|1|2|G|1610
8BQX|1|2|A|1611
8BQX|1|2|U|1612
8BQX|1|2|U|1613
8BQX|1|2|A|1614
8BQX|1|2|C|1615
8BQX|1|2|G|1616

Current chains

Chain 2

18S rRNA

Nearby chains

Chain B

40S ribosomal protein S5

Chain F

40S ribosomal protein S16-A

Chain L

40S ribosomal protein S28-A