J3_8BQX_009

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCAGAC*GGGUG*UUAGACG

Length

18 nucleotides

Bulged bases

8BQX|1|2|A|1217, 8BQX|1|2|G|1445, 8BQX|1|2|C|1447

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BQX_009 not in the Motif Atlas

Homologous match to J3_4V88_038

Geometric discrepancy: 0.1646

The information below is about J3_4V88_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_75993.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

8BQX|1|2|C|1215
8BQX|1|2|C|1216
8BQX|1|2|A|1217
8BQX|1|2|G|1218
8BQX|1|2|A|1219
8BQX|1|2|C|1220
*
8BQX|1|2|G|1263
8BQX|1|2|G|1264
8BQX|1|2|G|1265
8BQX|1|2|U|1266
8BQX|1|2|G|1267
*
8BQX|1|2|U|1442
8BQX|1|2|U|1443
8BQX|1|2|A|1444
8BQX|1|2|G|1445
8BQX|1|2|A|1446
8BQX|1|2|C|1447
8BQX|1|2|G|1448

Current chains

Chain 2

18S rRNA

Nearby chains

Chain C

40S ribosomal protein S10-A

Chain M

40S ribosomal protein S29-A

Chain N

40S ribosomal protein S31