3D structure

PDB id
8BQX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome in complex with Map1 (conformation 2)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
UGAACUA*UAG*CGAA
Length
14 nucleotides
Bulged bases
8BQX|1|BQ|A|817, 8BQX|1|BQ|G|924
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8BQX_017 not in the Motif Atlas
Homologous match to J3_8C3A_003
Geometric discrepancy: 0.097
The information below is about J3_8C3A_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_39238.5
Basepair signature
cWW-tWH-cWW-tSW-F-F-cWW
Number of instances in this motif group
7

Unit IDs

8BQX|1|BQ|U|814
8BQX|1|BQ|G|815
8BQX|1|BQ|A|816
8BQX|1|BQ|A|817
8BQX|1|BQ|C|818
8BQX|1|BQ|U|819
8BQX|1|BQ|A|820
*
8BQX|1|BQ|U|905
8BQX|1|BQ|A|906
8BQX|1|BQ|G|907
*
8BQX|1|BQ|C|923
8BQX|1|BQ|G|924
8BQX|1|BQ|A|925
8BQX|1|BQ|A|926

Current chains

Chain BQ
25S rRNA

Nearby chains

Chain AF
60S ribosomal protein L37-A
Chain AL
60S ribosomal protein L39
Chain AQ
60S ribosomal protein L15-A
Chain AW
60S ribosomal protein L2-A

Coloring options:


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