J3_8BQX_026

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGCU*ACGUUCUAGCAUUCAAG*UGAU

Length

25 nucleotides

Bulged bases

8BQX|1|BQ|G|2549, 8BQX|1|BQ|U|2550, 8BQX|1|BQ|U|2551, 8BQX|1|BQ|A|2554, 8BQX|1|BQ|C|2560

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BQX_026 not in the Motif Atlas

Homologous match to J3_8P9A_060

Geometric discrepancy: 0.1973

The information below is about J3_8P9A_060

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28639.1

Basepair signature

cWW-tSS-F-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

8BQX|1|BQ|A|2529
8BQX|1|BQ|G|2530
8BQX|1|BQ|C|2531
8BQX|1|BQ|U|2532
*
8BQX|1|BQ|A|2547
8BQX|1|BQ|C|2548
8BQX|1|BQ|G|2549
8BQX|1|BQ|U|2550
8BQX|1|BQ|U|2551
8BQX|1|BQ|C|2552
8BQX|1|BQ|U|2553
8BQX|1|BQ|A|2554
8BQX|1|BQ|G|2555
8BQX|1|BQ|C|2556
8BQX|1|BQ|A|2557
8BQX|1|BQ|U|2558
8BQX|1|BQ|U|2559
8BQX|1|BQ|C|2560
8BQX|1|BQ|A|2561
8BQX|1|BQ|A|2562
8BQX|1|BQ|G|2563
*
8BQX|1|BQ|U|2578
8BQX|1|BQ|G|2579
8BQX|1|BQ|A|2580
8BQX|1|BQ|U|2581

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AA

60S ribosomal protein L8-A

Chain AH

60S ribosomal protein L25

Chain AN

60S ribosomal protein L27-A

Chain AT

60S ribosomal protein L43-A

Chain AW

60S ribosomal protein L2-A

Chain AY

60S ribosomal protein L30

Chain BN

60S ribosomal protein L34-A