J3_8BQX_028

3D structure

PDB id

8BQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

8BQX|1|BQ|A|2887, 8BQX|1|BQ|U|2888

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BQX_028 not in the Motif Atlas

Homologous match to J3_5TBW_014

Geometric discrepancy: 0.0938

The information below is about J3_5TBW_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_98597.1

Basepair signature

cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

2

Unit IDs

8BQX|1|BQ|U|2886
8BQX|1|BQ|A|2887
8BQX|1|BQ|U|2888
8BQX|1|BQ|C|2889
*
8BQX|1|BQ|G|2914
8BQX|1|BQ|U|2915
8BQX|1|BQ|U|2916
*
8BQX|1|BQ|A|2930
8BQX|1|BQ|C|2931
8BQX|1|BQ|U|2932
8BQX|1|BQ|A|2933
8BQX|1|BQ|A|2934
8BQX|1|BQ|U|2935
8BQX|1|BQ|A|2936

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AB

60S ribosomal protein L23-A

Chain AU

60S ribosomal protein L16-A

Chain BA

60S ribosomal protein L3