J3_8BR8_019

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CCAG*CUUGUAG*CGGACGCG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BR8_019 not in the Motif Atlas

Homologous match to J3_4V88_035

Geometric discrepancy: 0.1516

The information below is about J3_4V88_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.1

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8BR8|1|St|C|905
8BR8|1|St|C|906
8BR8|1|St|A|907
8BR8|1|St|G|908
*
8BR8|1|St|C|1269
8BR8|1|St|U|1270
8BR8|1|St|U|1271
8BR8|1|St|G|1272
8BR8|1|St|U|1273
8BR8|1|St|A|1274
8BR8|1|St|G|1275
*
8BR8|1|St|C|1297
8BR8|1|St|G|1298
8BR8|1|St|G|1299
8BR8|1|St|A|1300
8BR8|1|St|C|1301
8BR8|1|St|G|1302
8BR8|1|St|C|1303
8BR8|1|St|G|1304

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SF

Ribosomal protein S5

Chain ST

Ribosomal protein S16

Chain Sg

Ribosomal protein S28